NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10004762

Scaffold JGI25922J50271_10004762


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10004762 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3859
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F020167Metagenome225Y
F021288Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_100047621F021288AGGAGMLGYTLEDLENMVYGVKTADFMLDADQNPAIHNYLVMAQDFLQGLWAEGYFD*
JGI25922J50271_100047622F020167N/AMTQTMRTIDELVNEMYMDNESHLEYMENMNGGDCDCSIHTTLNTIVKYWWDEEN*
JGI25922J50271_100047628F000684AGGAMTISGYTYQIGDLFTTSKTGITGRIADFTPITNKVTRVSLVLSNGSRRLAMVKTSK*
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