NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10006806

Scaffold JGI25922J50271_10006806


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10006806 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3177
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F009531Metagenome / Metatranscriptome316Y
F020910Metagenome / Metatranscriptome221Y
F022197Metagenome / Metatranscriptome215Y
F035304Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_1000680610F035304N/AMDLNTLKEYIKITIISMEQDLENEDGADSIVPYLEGALHISRHYLSVVEDIL*
JGI25922J50271_100068064F009531AGGMTKQVAIYEMNYSCSPGGIDCWEATIQGYGESTTASDFKTAGEALNWVLDRHPDEMLELVVTSHPAYEKEYV*
JGI25922J50271_100068065F022197AGGAMTLETETIEDPTLYADYYSCDLAISITNIKAKNIHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFIPELGEWHTK*
JGI25922J50271_100068066F007691AGGVAYKVNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAGIEVD*
JGI25922J50271_100068069F020910AGGAGMWSRYTFVCDPDECDALVEFTVRDDFGFPLGVVEMKCPCGRMLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN*
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