NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10007941

Scaffold JGI25922J50271_10007941


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10007941 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2924
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001460Metagenome / Metatranscriptome690Y
F050377Metagenome / Metatranscriptome145Y
F053291Metagenome / Metatranscriptome141N
F085700Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_1000794110F001460GGAGGMLGYTKTDLDEMINSVHDAKLFYLRTPSDLMDKSLLTEGLLKTNDFLQGLWAEGYFD*
JGI25922J50271_1000794111F053291AGGAGMITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMLKYMEAIEC*
JGI25922J50271_100079412F085700AGGCGGMAKANEFKAAEKLTDYLNNANFSPAVMANVLTTEHTLYTQDRLMELVRYIIQYNSLRLKSEWDKGYTSEGLLLADALNDMIEAKYGAVDRNLTIKSLEETRVRDPKYIMDLDSF*
JGI25922J50271_100079413F050377AGGAMTSTPTTTREYLKTQGISVGKRGRFSAAALGVISKAAQEGVVFTDKKNVK*
JGI25922J50271_100079415F000441AGGAGGMKMSDKYLNDQLSKAQKLLWGGSETENIEAHNIISKLIKEKIEQVEL*
JGI25922J50271_100079417F000263GAGGMNAEDIGLPPHLQRMVNAGVSGLDILHGELKNLMLIAEQDLTSALEQEELSEEAMDSMVRTECEGRLDTLVDLYRLTYQLSFAIQERTDFGVANEA*
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