NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26084J50262_1004872

Scaffold JGI26084J50262_1004872


Overview

Basic Information
Taxon OID3300003427 Open in IMG/M
Scaffold IDJGI26084J50262_1004872 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6196
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000375Metagenome / Metatranscriptome1217Y
F025231Metagenome / Metatranscriptome202Y
F083942Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
JGI26084J50262_100487211F083942GAGGMAILKNVELYFAKLNPKKPNDRFDKENPTWEVQIRTRSKAQAKEWKDLSINVKPDEDDAGIFYKATLKKRSKKRNGEEQNPVSLVGGDLSTIDPDKLGNGSVGNVRVYQYDYNIGGREGIATMLMAVQVTTYKEYEPKPREDDFEMTDMKVVKVADNQQIDAEDMAEDDLDF*
JGI26084J50262_10048725F025231N/AMATEIRETYYEIYLDGELYHEGSFEACKEYALHALDDDCAEVYKVTVIEEKIVV*
JGI26084J50262_10048726F000375AGGAMSKLHDLEPMIMDCWHVCDDLQAVFKQIGDGEREPTPDELMNALMGMQQLYQWKFEQLFELYESAIKERINNGN*
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Institute for Fundamental Biomedical Research
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