NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25914J50564_10001753

Scaffold JGI25914J50564_10001753


Overview

Basic Information
Taxon OID3300003429 Open in IMG/M
Scaffold IDJGI25914J50564_10001753 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7434
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Pithoviridae → Pithovirus LCPAC302(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104370Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
JGI25914J50564_100017534F104370N/AMKIAIILFNFLACFAXKNRFSRLVGSVYGGTKNVGSKIIHAIKNYADNSRTLVTSSLHAATDPNYRKQFARSKLARGSAVSKKCNSRCSAKIECNKRCQLARDRYQLALAKAKYKKDNVKKYTSTQLNQRYYSSQTAKGGCNSRCQAAKTNYQKHRTQYMKTFHEPCQNGHIKNTGTLNGKPLSDQGNPSGDTPGDKTTIGGYGGVSKGRPLGAPGAAQINWPNSAKYNWRTDCKSYSKMIGSTKSPSASLSSKLYVI*

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