NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25914J50564_10013653

Scaffold JGI25914J50564_10013653


Overview

Basic Information
Taxon OID3300003429 Open in IMG/M
Scaffold IDJGI25914J50564_10013653 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2534
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021112Metagenome220Y
F047674Metagenome / Metatranscriptome149Y
F070118Metagenome123N

Sequences

Protein IDFamilyRBSSequence
JGI25914J50564_100136532F070118AGGAMSELDFKPISCKKCGNLIWAGVSATSRCDIKLDTNRLNLTDEIVALTAGIATYELHRTAVSFEATRRMATRMSVASPIVVATHTCRPLTVFAEQPPDYFNRPKLSTTSEKVPF*
JGI25914J50564_100136533F021112AGGVWLTNIPDLQYQAGFHIAPGRSGSGAASAERSIGVNVNALDYSMAIELLGILHSWESEIRAARRLTPPALLKKEPTTDMEVQVACQFQLAHLEWTLGQEWASDFYNEIKEQHAKGMAAAKQFVEQPRSIPCPTDDCHKFVVIDAENLMSDVSCFGCKQSWTVLRLVALAMSNPSRKFFLDVEAIALWLGITQRQVYKIVKANNIDRRGSLYDLAGVIANR*
JGI25914J50564_100136534F047674GGAMDTETIEEIDEALLHAITTRANAIDSKKHIVDKFIDDLLDSRLELTKC*
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