Basic Information | |
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Taxon OID | 3300003429 Open in IMG/M |
Scaffold ID | JGI25914J50564_10014500 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2449 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F007468 | Metagenome / Metatranscriptome | 350 | Y |
F025737 | Metagenome / Metatranscriptome | 200 | Y |
Protein ID | Family | RBS | Sequence |
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JGI25914J50564_100145002 | F000868 | GAGG | MSSFLENENEMLIDAIYSEIGEQLVEDWMNSNLDEGQLYADWCVADMSNSNYLKGRFNQFHNLSPTDNYYLQWDENAXXHTITS* |
JGI25914J50564_100145006 | F007468 | AGGA | MDYGQKDISNMLTKSSKFIEYMKIHLISLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMNDDLQGKGY* |
JGI25914J50564_100145007 | F000263 | AGG | MNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLADALEQETLSEEAMDSMVRTECEGRLDTLVELYQLTYQLSFAIGARTL* |
JGI25914J50564_100145008 | F025737 | GGAG | MKPEDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYKQNVTIDQMWDHLCEAVEA |
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