NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25921J50272_10000110

Scaffold JGI25921J50272_10000110


Overview

Basic Information
Taxon OID3300003430 Open in IMG/M
Scaffold IDJGI25921J50272_10000110 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25353
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (22.58%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015080Metagenome / Metatranscriptome257Y
F031454Metagenome / Metatranscriptome182Y
F048940Metagenome / Metatranscriptome147Y
F101038Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
JGI25921J50272_1000011013F048940N/AMMNGVHKTKQMTTAQRMERQFFIQFIALVNEVQGKTKLPSQIHSQKKSTWVKQTQNPKAKKDALSAV*
JGI25921J50272_1000011018F031454GAGMNESTLDLFCQHEDEMFAEEYVTELEMKAAYFEVSIDYYMMEFM*
JGI25921J50272_100001102F101038N/AMELTNSFPPVDAAINKLKNFDYVQFGENVIQFTATLSAIIVGIASYVWTAFQLWWNDNGEATQVNFIRFVVNVIDFIAAVVIAIPKVYRWMKLNGNRLIDSLFFQFAFS*
JGI25921J50272_100001107F015080N/AMFEQLTFVPHNIPNAVQGKYKFSNGWEISVVSGPAGCGLYGVIRDFTYEVAIFRPNGNMTEDVSGWNTKEEVSAMMWVLSQL*
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