NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25921J50272_10004002

Scaffold JGI25921J50272_10004002


Overview

Basic Information
Taxon OID3300003430 Open in IMG/M
Scaffold IDJGI25921J50272_10004002 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4701
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036198Metagenome / Metatranscriptome170Y
F055663Metagenome138Y
F073280Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
JGI25921J50272_1000400213F036198N/AMTIDPKTEQRRQDYLDALYERSGRTCSTYTGLYQERLTELVQRDMQEILSDA*
JGI25921J50272_100040027F073280GGAGGMTDHLTSRAQRLIEEFEYGESVREGIANVLLHLAATWDNYSDGDEYWHGVTVDTLEEFATELTAPTLLDRALAGDRAAARQFLQEAGFVDEHGQLTAPYRLETPDD*
JGI25921J50272_100040028F055663GGAGMTDFLNLKISQKQIVCPKHGTHKHYISSDIEGHEGHWCMLCWLETLGSSLPFVEEQSND*
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