Scaffold JGI25921J50272

Basic Information
Taxon OID	3300003430 Open in IMG/M
Scaffold ID	JGI25921J50272_10007496 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003430 Open in IMG/M

Scaffold ID

JGI25921J50272_10007496 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3339
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3339

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000714	Metagenome / Metatranscriptome	924	Y
F002207	Metagenome / Metatranscriptome	583	Y
F007470	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100074962	F000714	GGAGG	MDTTTIESDAFXSPAVXYNPDLLVTYKVIKGYSDPEFTTSKVASLEWDLHNGRQSQKSVGVLQDKINVAKDIIAEAYXDSNDQDTLRSIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA*
JGI25921J50272_100074964	F000311	GAGG	MYFELTAPNQVAFERATWDAEVMGLDPEQMGPLTFNIGTGSIEKVSRLRDKFNLTESYVSEYESTGY*
JGI25921J50272_100074965	F007470	AGGAG	MDYQDGFEDGVKFAREVIIANIRLWAETSEDGQAHDDIADRIEFGTVDYDL*
JGI25921J50272_100074967	F000450	GGCGG	MGDRANFGFVQPNGQTIVLYGHWAGHQMLGRLADAVIAARPRWNDEGYATRIAISQLIGDQWNMETGWGLYVNEIADNEHKIAIVDFRQQTFSLHEEAPHNDLDNKVKGMKNEAIFTQDLSAFCEKYALDNILTV*
JGI25921J50272_100074969	F002207	AGG	MPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETYGMGDISSMGFPTKIKQVEYSNPVFAFYNIHSYKDDGITDEEYACQPTRSGADIKDPNWFAQEIAHAKTQKDWYSWNNSNWGTKWDVAVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25921J50272_10007496

Overview

Ecosystem & Geography

Associated Families

Sequences