NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25921J50272_10013298

Scaffold JGI25921J50272_10013298


Overview

Basic Information
Taxon OID3300003430 Open in IMG/M
Scaffold IDJGI25921J50272_10013298 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2366
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000714Metagenome / Metatranscriptome924Y
F001043Metagenome / Metatranscriptome794Y
F006984Metagenome / Metatranscriptome360Y

Sequences

Protein IDFamilyRBSSequence
JGI25921J50272_100132981F006984AGGAMPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISSMGFPTKIKQVEYSNPVFAFYNIHSYKDDGITDEEYACQPTRSGAD
JGI25921J50272_100132984F001043GGAGMSDYKDGFDDGYKFAREEIMEKLAEIDIADIDSWILDRLSEMIEGGTL*
JGI25921J50272_100132985F000311GAGMYFELTAPSQVALARAIWDAELIGLDPQQLGPLTFNIGTGSIEKVSRIRDKYNLIESYTSEYETTGYTGR*
JGI25921J50272_100132986F000714GAGGMEETTTIGSDALHSPAVAYNPDLLVTYKVLHGYSNPEYTTSKVTSLEWDLHNGRQSQKTVSLLQSKISTVKDIITEAYADSEDQDTLRAIAEALDIELTRQVEFTCSIEVSGTMEIDLLSDWGNDLEDEVTDNLYVESQSGRIEIGDIEICHVREC*
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