NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20214J51088_10271715

Scaffold JGI20214J51088_10271715


Overview

Basic Information
Taxon OID3300003432 Open in IMG/M
Scaffold IDJGI20214J51088_10271715 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1169
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location NameSacramento, California, United States
CoordinatesLat. (o)38.1072Long. (o)-121.6485Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017414Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
JGI20214J51088_102717151F017414N/AVPPMDAALLEDLESTRWAAGPEPLSGDVLLTWRVLNLAVQDLQSVTVCHNALLASLRRGLMGGLSTLKTTTIGKPLIDENSLHASAKLVIMLLLLLLAEVEFSLPGGQHAVFATFGGQNVAFFATFFASTGNLGQQNKADLVGSAGLLAGFAYGVVAAFLTSHQPQFPLLLALVLLGEYLAALVFFTVPRYSIAGFQAGLALFFAYLATPGPEWGSFTLVWTRFAGLVVAGFTAIVIHAYLWPVLPMRQLRDLIAAALKDTAESLGQLFSVPRAAWKGTPKSLGETVRRARDLLDDARYLPGPDHADPAYQGILMNLQEIDANLEFVHFLIGLEKEHSLRVRLFQESGDYADQARKNLDHVTRQFQRDLNLAAGLEAIHWEPDVLGRWR
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