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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003437 Open in IMG/M |
| Scaffold ID | draft_100339 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15381 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (80.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | San Pedro Channel, Pacific | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.42 | Alt. (m) | Depth (m) | 890 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000245 | Metagenome / Metatranscriptome | 1468 | Y |
| F002715 | Metagenome / Metatranscriptome | 535 | Y |
| F006919 | Metagenome | 362 | Y |
| F017718 | Metagenome / Metatranscriptome | 239 | Y |
| F052651 | Metagenome / Metatranscriptome | 142 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| draft_10033912 | F002715 | AGGA | MPEHELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTTDKLQQLTVQIIQLNTRQEDYLRHSTSMTDEFKILHTRIGDLHDKQLAAQKDIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATTISVFLKD* |
| draft_10033914 | F000245 | AGG | MKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPNSDMMIHVYLRKMTPPSKKGMMAFNYQLEDK* |
| draft_10033915 | F006919 | GAG | MKSFIQHLKEFASYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHTTDLSGLEKLKRLEGGKKTISAFFSMMSRYMEGGIASGGGIVVEMDADVLVSASDDIMSQVDNKGRRWVEMSWFANAQRYGTGPKFAVVERELNDLIRDLVVKHLEPIIGNRARTEQEFYLWGDMKKQLKGDGRKIAAVIKDYFDGVEKVIKKNSEVMGNIFYGYAKSKRQTEQAWDEQIVNNIEITKVHIIDFTTKAPSLQGQFDASKDLAKKNSWPMKVWDATETMDLEVYTRQVAQAEVRTR* |
| draft_1003394 | F052651 | GGA | MDINKEYFNDKSEAEKLRNVSSLVDSIVNAEPVEELKVDSGVGEGDGTEKLEVPEIDPLVDLVGKAISKGKPKGFFMQGVQSDDHPKL* |
| draft_1003395 | F017718 | GGAG | MTTQNYDSSLDLVNDRLKQIDDIMEKFSGFPEVQQKLQGARDALVESEEEIMTYYDLTSIEKYNKT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |