NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold P52013CM_1002743

Scaffold P52013CM_1002743


Overview

Basic Information
Taxon OID3300003465 Open in IMG/M
Scaffold IDP52013CM_1002743 Open in IMG/M
Source Dataset NameOre pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Campinas
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)244379
Total Scaffold Genes249 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)182 (73.09%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location
Location NameMina do Sossego, Brazil
CoordinatesLat. (o)-6.426389Long. (o)-50.051389Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007854Metagenome / Metatranscriptome343Y
F013999Metagenome / Metatranscriptome266Y
F016649Metagenome / Metatranscriptome245Y
F017625Metagenome / Metatranscriptome239Y
F018762Metagenome233Y
F055579Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
P52013CM_100274364F055579GGAGGMSNDAYTHYVVLNETILGEARIIEKCNEWISLAFVRLGTGSSKPFNDYAFVENRTLVPKVTN*
P52013CM_100274370F007854GGAGMNTLIANQYGRVQGEVGGTGLALAVAAQTPRRESVELHTRVDSVEQLLHLLAIMRAVERRIEHFQLRDAKKPESGEQEDPFDDTICSEGDLFSSNGNQSKNKIYGRFAQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEAQAFHALARRALFGAGQVDLLLRDELSLSVSVNVSGHGVRFDVQTPIWRSQFAIPNANELATLAVFTRRAVNQERTAPIVYGGAANQLRLRKRSDGQVIAEFEHQGTAEKIVLSTLQLYELEILAQYALHRAFEPVSVAIGTGQPHESVTAAQIA*
P52013CM_100274381F018762AGGAGMRHLPKKLAYAGVLLASLFLVPLTAHAIFGTMPVIDWTAVARLGEQIGLSRDTLNTLGLYVQQYNRINAGVQEGVALARGRQLRGVLNQVVGSEFPEFQELQQNFRNVLVDPATIRHDIENAYGVTSGNFPIGRKKRIDAADATATLGLFDAARMELVSEQEELDANEIEERAAVASPGGAAKLSAAANGAVLRSQAYNQRLLARLLRLHALSIARENSIEKEQEQIRQDQVNAVSNMIGSMQLSYGIGDRVGR*
P52013CM_100274384F013999AGGAGGMSRILNRGRTVARYFWRSLGSLVMTLTLGSPAFAQVGGDRVSGFLSNSLSYAQGLGIFAAGFLVIWAVANVSRERPSGKQWAGAGGSLLLSSLLQLLRTFAG*
P52013CM_100274388F017625AGGCGGMRKREQNEFDQEEFFGFAKSYLSEAFPNPQRIGCPADSDLTRMAEHPVEERDAGVSTHLTRCSPCFKRYMEILAALKQQSR*
P52013CM_100274391F016649GGAGMRDKYLSLCLLVSLVILPAIGCKWISRPNVSGVWKGSIEASESGGKNKWQGPAELTLNQNGDAITGTLSFTHPQGGRVQVPISSGVVSQDAVTFSGQQQFPLGGSVEVTFHGKVSGTSLTGTTDMTSRGLFGTVTNSGPLNLTKQ*

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