Scaffold FeGluNO3_10306058

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FeGluNO3_10306058

Scaffold FeGluNO3_10306058

Overview

Basic Information
Taxon OID	3300003471 Open in IMG/M
Scaffold ID	FeGluNO3_10306058 Open in IMG/M
Source Dataset Name	Fe-reducing enrichment culture from wetland. Sample 5 with periodic nitrate additions.
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	706
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures

Source Dataset Sampling Location
Location Name	Dorn Creek (Dane County, WI)
Coordinates	Lat. (^o)	43.135131	Long. (^o)	-89.441777	Alt. (m)		Depth (m)	0 to .3048
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003908	Metagenome / Metatranscriptome	462	Y

Sequences

Protein ID	Family	RBS	Sequence
FeGluNO3_103060581	F003908	GGA	MDVSMNVTTRLACAAAVLGACGSPSVKHMTQQEMIAADPLPLAKGATWTYNVVIKRFEVDAEKETTRTLTWVTEVIDAKTAGAVTAYRVKGWPSDLADLDQSPPSNETFILRSGNEFLFGASAEPTLEGAQGWFNWPVVDGQRICPNRMVYCWQVSAIDTGYALKFITGPDEQIFEIEPGTGVSR

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