NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NAP4_1000597

Scaffold NAP4_1000597


Overview

Basic Information
Taxon OID3300003474 Open in IMG/M
Scaffold IDNAP4_1000597 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5144
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location NameSarno river estuary, Gulf of Naples
CoordinatesLat. (o)40.72683Long. (o)14.46133Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006331Metagenome / Metatranscriptome376N
F046345Metagenome151N
F068778Metagenome124N
F071009Metagenome122N
F086945Metagenome110N
F090089Metagenome108N

Sequences

Protein IDFamilyRBSSequence
NAP4_100059713F086945N/AMSTKFDINEEITDCPFDWSSIDHRAIADGWYYFWGNTQITSFETDKKGKYVRDEDGKLIAHRTKISRKLPRTWFNKQQEGQEY*
NAP4_100059714F006331AGAAGGMTEEKKTKGKAWRMREWGRAQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVDDFMDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALDTMHPSKLD
NAP4_10005975F046345N/AMNIKINVREDSMGCLYLTPVKQSYIDQIIEYLKEFNVDSDGSVLIQSDYDVESFYDDCSYRQRKDIQSGWGANMLFDAWTFLNYIGWDACEGLELN*
NAP4_10005976F068778N/AMNYLLGNKNIVNWGVFAEVEDSTDPDLTQAIELVLPEHIQQKIYDLITNNIDQAKAIEAMAQF*
NAP4_10005977F090089N/AMSVTIYLTDHNGNQIAFFYRVDNERYNTVPNILWACRQYPQFQGTASSKSDFIEQAKQTLKEIKKLSVPVRSSKKCTDCDISLQGMENEGTTCNDHNFNR*
NAP4_10005979F071009N/AMTTDPENLPSLDDASLDALIQHYLSLKQRLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNNQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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