NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26238J51125_1004610

Scaffold JGI26238J51125_1004610


Overview

Basic Information
Taxon OID3300003478 Open in IMG/M
Scaffold IDJGI26238J51125_1004610 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4251
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007004Metagenome / Metatranscriptome360Y
F009987Metagenome / Metatranscriptome310Y
F045800Metagenome / Metatranscriptome152Y
F052862Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
JGI26238J51125_10046102F009987GGAGMLGLIGNALGLGIKIMDKIEKNSDKASFEEFKKRKKEMDNSLADTDVEGIDSMFEYLADRARGGKTGRKG*
JGI26238J51125_10046103F007004GGAMKNVMIGFCLIVLIGCGTSNAYQRPSVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCREGG*
JGI26238J51125_10046104F052862AGGAVDEQSRQSATQILEIKKDIEHLQYILSELEKDKEFLKEHFTLKNAQRLEDIGKIHTRLDRHIQTELEYHQSVRDKATTAHTAIHKRIGSAERWIWIFFGGITVISALLGKASLSGIFGN*
JGI26238J51125_10046107F045800AGGAGGMLDHTTVEDCLEVKEYLDEMIEYYKDTHNPLLVERRKTYKDIKIALFGEDLDYGNTGNKDSPAWFC*
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