NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI26540J51217_10019876

Scaffold JGI26540J51217_10019876


Overview

Basic Information
Taxon OID3300003489 Open in IMG/M
Scaffold IDJGI26540J51217_10019876 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2710
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Aiptasiidae → Exaiptasia → Exaiptasia diaphana(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F007322Metagenome353Y

Sequences

Protein IDFamilyRBSSequence
JGI26540J51217_100198761F001866GAGLQSIVAGVGDDDSALVGDAHSSRKLELAWLIAFLAELEQERAIDQRQYLHSMIVVIRDDDSMSIIIDRNAHWAVELARSRSSLADREQEREIDRRQEHQSMVVGVGDDDAMMMLVDRNASRTVELEIS*
JGI26540J51217_100198762F007322GAGGMIVVDRKGIWIQELAWFAAFLAELGHERAAIIVITREYLHSMIVGVGDEQETSMMVEHQAAIIGEQAISIAMFLRADRELDSSITIKSIVFHLFLFNLSHTTTKR*
JGI26540J51217_100198763F001866AGGAMAFVSERLQSLVVGVGDDDSVLIVDAHSLGVIKLAWLVAKRAELEQERAIDQRQYLHSMIVGINDDDSMSIIIDRNACWTVELARLRSLLADGEQERQIDRRQEHQSMVGGIGDDDAMMMLVDRNASRILELEIY*
JGI26540J51217_100198764F007322GAGGMIVIDRKTPWLLELAWLAPILAELGHERESIIIIITREYLHSMIVAIDDEQETSMMVEHQAHRIVEQAISLALLLGADRELDSSITIKSIVFHLFLFNLSLTTTKR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.