NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26540J51217_10029082

Scaffold JGI26540J51217_10029082


Overview

Basic Information
Taxon OID3300003489 Open in IMG/M
Scaffold IDJGI26540J51217_10029082 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1940
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F062911Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
JGI26540J51217_100290823F001866N/AMVFGVDDDDSTLIIDAYSLRIVELAWLIASRAELEQERAIDQRQYLHSIVVGINDDDSMSIIVDCNIRWRIEFTRLRSMLADREQEREIDRRQEHQSIVAAIGDDDAMMMLVDRNAPRPVELEIS*
JGI26540J51217_100290824F062911GAGGMIVVDRNALWVLELASLAELAHERAIITREYLHSTIIELGDEQETSMMVERQTSREAELAISLASLRGADRELDSSITIKSIVSHLFHFNLSLSQNDKEMLQAPNCSDQRDEDVKISHERYERHQASKQRATSNKNQSMKEQRTAPPSLPQPLPHSHEPLPDSIEITY*
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