Scaffold JGI26540J51217_10041719

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26540J51217_10041719

Scaffold JGI26540J51217_10041719

Overview

Basic Information
Taxon OID	3300003489 Open in IMG/M
Scaffold ID	JGI26540J51217_10041719 Open in IMG/M
Source Dataset Name	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1433
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location Name	South Africa: Cape Town
Coordinates	Lat. (^o)	-33.927	Long. (^o)	18.452665	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26540J51217_100417193	F001866	GAG	MAFVSECLQSKVVAVGDDDSALIGDAYSLGMQELAWLIALRAELEQERAIDRRQYLHSIIVGVRHDDSMSILIDRNAYWVMELALVAADREQEREIDRRQEHQSIVASVGDDDATMMLVDRNASRELELEIS*

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