NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25926J51410_1000003

Scaffold JGI25926J51410_1000003


Overview

Basic Information
Taxon OID3300003490 Open in IMG/M
Scaffold IDJGI25926J51410_1000003 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26693
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (86.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018698Metagenome / Metatranscriptome233Y
F020883Metagenome221Y
F029734Metagenome / Metatranscriptome187N
F042747Metagenome / Metatranscriptome157Y
F053803Metagenome140N

Sequences

Protein IDFamilyRBSSequence
JGI25926J51410_100000310F020883GAGGMNASFRIEQVSFLLDQYREATHRLGMQDLAIWQSLEDIYKRPELHDLTLLSTREEAFDKIVKDNWFVDMGQHYYGLDYETIDELTLEYLKDNQLVKEINND*
JGI25926J51410_10000032F029734AGGAMRTVESKTLVGVVKNGVVHVSQADSKRIFAKVRITTNTAKSSKKIEAILSAFKAYPNFTLVASEIAKVEPKAYLTLKGSVA*
JGI25926J51410_100000335F053803AGGAMEVELTEDEIIDSLRFIHRVRQNKKEFDVTDRKFDKNNSSYSVNLMGRLGEVACSRVLGIPTDKTITPGGDNGHDLISVLGKSIQVKTSTLSQLIFNAPELFISDVAVLVKFSGDKQLPHVDSLFDVIGWTTRENFLANHYLHDYGYGTRLVMDANQLQPIEVLINEISRLH*
JGI25926J51410_100000358F018698GGAGMAEYTEYDFEDDSSDFGTDLVKKLRKQVDLLSKEIKERDQVIEEFQTYSHEASVGEILAGFGLSPKIAQFIPAEIEADEDSISEWLTEYGEAFGITAVDESEAGYEPDADAQSFEQISDFENGDMDPNVGRDISSLIANATSPEELTNFLKR*
JGI25926J51410_10000037F042747AGGAGGMMGYKYEDIQKFGSALNGAEFYLPPNDTEIREGLIKIWDFFEGLLAEGYVEGEEISNV*
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