NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25926J51410_1004443

Scaffold JGI25926J51410_1004443


Overview

Basic Information
Taxon OID3300003490 Open in IMG/M
Scaffold IDJGI25926J51410_1004443 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2911
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F039497Metagenome / Metatranscriptome163N
F082149Metagenome / Metatranscriptome113N
F104483Metagenome100N

Sequences

Protein IDFamilyRBSSequence
JGI25926J51410_10044432F082149AGGMRVGLHIDWCISRWFGRRNNLEIKIFLPTITFGINNDYENKWCGFVFNLKTDISFESYEYGKILSLILFGFGVKVSEFNL*
JGI25926J51410_10044433F039497GAGMSEEDNFNCEAGNQLRDMLYKDIVRYAQESDMTAYQAIGVLESLKFDLLNAMRNAVKEEDEDEI*
JGI25926J51410_10044437F104483GGAGMNKKIIDKIDLVIDDINYLQELIDFDTTDSSEYDLDSVVNLLAEIRGRVSNQEEEVERIDLKQL*
JGI25926J51410_10044439F024040GAGGMNIYVSGHNWLAKVDLEDSIKKNDRYTEATTRAIESLLDDDEKQGVELKIMDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEEYKFLRNYEENCKEQGL*
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