Scaffold JGI25923J51411

Basic Information
Taxon OID	3300003493 Open in IMG/M
Scaffold ID	JGI25923J51411_1002260 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003493 Open in IMG/M

Scaffold ID

JGI25923J51411_1002260 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4102
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4102

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F002433	Metagenome / Metatranscriptome	559	Y
F003182	Metagenome / Metatranscriptome	502	Y
F009883	Metagenome / Metatranscriptome	311	Y
F010982	Metagenome	296	N
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25923J51411_10022604	F002433	N/A	VSVGEWTAVGGLVLAILAAIYSSMRIIIKSVMSELLPNGGSSMKDQISRIEARLDYLYTQLIEKQ*
JGI25923J51411_10022605	F009883	GGAG	MNEISIVITCLIAGTLWAVMAYSVGYKEGQRQGYTRGRAVSRHIAARQKAAK*
JGI25923J51411_10022606	F012452	AGGCGG	MAAFLDGYEGNKERTDRWIKTYPEGRLEATIVNFDADKGSILVRAAAWRNQTETEPAGIDFAFGYQAAYNANMKRWFVEDTVTSALMRVMALVMGGAEKATHEVMASIKAPAADYDYWTTKHGDVPSFGTEQDLLDAEQKQNAVGSIADVTSHLGNEMMSQVPECSHGARIWREGISAKTGKAWGNYSCIERKPNQCEPVWYVFTGRGKWEPQI*
JGI25923J51411_10022607	F000403	GGAG	MSDYMEIINPQTRIARLYFQGEVIQEYKVEQCDKCSKLTKFDSFGYQIGYDRTEKIIWFCGDCR*
JGI25923J51411_10022608	F010982	N/A	MIMVRLSRQDEVLAHTTGLARESRYGSNPKFMGNKGNFHNGVVVHSEGVGAEIAVARYFGVDDFKPTVNTFKNEPDVYWNGIAMEVKQTSHRNGHLIITDDDRDTDIAVLVVGESPSYYVVGWIPVGVAKRPRFASAMGGYWVSQINLQPIETLRKSTHANT*
JGI25923J51411_10022609	F003182	AGGA	MPILEFDCSICAKLYGKAKQRHGLKKGVELTVHEWFAQCHGCGAFGIKIVDDAKIDELSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25923J51411_1002260

Overview

Ecosystem & Geography

Associated Families

Sequences