Basic Information | |
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Taxon OID | 3300003499 Open in IMG/M |
Scaffold ID | JGI25930J51415_1000130 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14768 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (72.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001872 | Metagenome / Metatranscriptome | 623 | Y |
F002794 | Metagenome / Metatranscriptome | 529 | Y |
F010535 | Metagenome / Metatranscriptome | 302 | Y |
F085392 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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JGI25930J51415_100013010 | F001872 | N/A | VTVAKAKPGIPNARDYIGNADGPAPKPRAGMDEWIRQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKHPKAGRLNALSFIDVVVANANDLGVQCILDYFPKEHGRAWRCDRYAWQKYTKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIHQ* |
JGI25930J51415_100013020 | F085392 | AGG | MSYVIASSKLGKIGELYEPRAGINVAALLAGGFIVEAEVSTTEEEKPAKTKSKKASKE* |
JGI25930J51415_10001307 | F002794 | GGAG | VSEGVSFNQGELTEETRKMVLESSASASHTMAIFNLMDDIMAISKNPHASIIRRLRAMKNQLSLNEPMPLHDVTTLDLAIKALEAHS* |
JGI25930J51415_10001309 | F010535 | AGG | MSEPQIFNYSVYTGVMDNGQEILVQIFTEPDTGKYLLGQIAFRSHASSWGVPIPLEKK* |
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