NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25930J51415_1000424

Scaffold JGI25930J51415_1000424


Overview

Basic Information
Taxon OID3300003499 Open in IMG/M
Scaffold IDJGI25930J51415_1000424 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9500
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (96.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011292Metagenome / Metatranscriptome292Y
F046909Metagenome / Metatranscriptome150Y
F068756Metagenome124Y
F093280Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
JGI25930J51415_100042415F011292AGGAGMTPKSFDIDTAKEIVGDARMRVIEAKARQDADNGVMDKPARAEGTYWDGVRSDMEYVVYVTAHHKRLERMQRMKERA*
JGI25930J51415_100042416F093280AGGAGMSPKIEALIKATGCADVGELFNRSIRLGQVLHQFKQEHGRIMNATELRYLEAVLHAKPQERT*
JGI25930J51415_100042420F068756AGGTGGMSDFKFGFGLAPIKKEGSIADPDEFTWECDCEACALKYQKWKEAFDIQQKQLRGDK*
JGI25930J51415_100042421F046909GAGGMKAPPGKGACLMMAKITYPRNQELSWKWLLAWGFYDMYVDGWYGGKA*
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