Scaffold JGI25930J51415

Basic Information
Taxon OID	3300003499 Open in IMG/M
Scaffold ID	JGI25930J51415_1000614 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003499 Open in IMG/M

Scaffold ID

JGI25930J51415_1000614 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8075
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8075

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F009064	Metagenome / Metatranscriptome	323	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022871	Metagenome	212	Y
F029029	Metagenome / Metatranscriptome	189	Y
F046331	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_100061411	F022871	AGGAG	MSELENAWESDEDFWDFVGQNXRMVGMAISDGQGLDILNALRDIYIEIDKETXTAXRMLTLLATVIYASSIGEGXQFTDEIQVLSAMEQFDTSIKEILDEESR*
JGI25930J51415_100061413	F008296	AGG	VNEAWVQEYELLVSSLASEYFRKYPMLEPADIRQTLWMWFVTHPIKYTEWSKLPAKDKEKLIAKSLRNAAITYCEKEKSAKVGYELADLYYYDASVIEAFLPSIIAGSYELPSKIKDLNFKFGKGEVTDGNNWLVLRSDIEKAFNQLAEAKQNILRLRFTMENCEWNDLAKELNTSADGARKRVERAINSLTRILGGWRTYTDTDTVETKTEDDDDRTES*
JGI25930J51415_100061414	F029029	GAGG	MTEQNPKEIKDLFKKDYTKAMDLRGHPIGDICVCGSELFTAIVAFEMGEICFYFLDGECVDCGSLVTLPTPIDDHGMDCD*
JGI25930J51415_100061417	F009064	N/A	MMSTIVNLSKDEVRVCTLLAVERWLTKFGSKDKPNYAQGKLDGKLEPEINANIRANVCEWAVAKQYNLGWNTPWYPNALHTKRYPISDVGNNIEVRSIRTQTSIPFWGKDRGRIIIGTKCLDTEYYSEIEIFGYIKPEQFTKEEYYDSYINGWRVPITEFREYDVKTI*
JGI25930J51415_10006145	F015719	AGGAG	MTMYYSEVDGTEPTVSIQVKDTKYTFTNESLTRLIEEKDAFKLELAQVERKLKSAQFDVREFFQARYETDHHEIVAEVDDVNSLLKDIGSEELTKSWSATVTITATVTGIEAPNAEAAQEIIENNIEINLTEDGDIWVDDITVESTYPEA*
JGI25930J51415_10006147	F046331	AGGAG	VSHSEAPISITIKTAAGSLVTVRAEHGEDLDHLVANGLDAITSATMELEKAIRGSIPAPMTVGQVASALGASITPLDNSTTTLGGRNCPHGKMTAIQGTGKDGSMYRGYFCPAPKGAFDKCKNVYLKTTDSAWNTFVPEQVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25930J51415_1000614

Overview

Ecosystem & Geography

Associated Families

Sequences