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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003499 Open in IMG/M |
| Scaffold ID | JGI25930J51415_1002350 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4251 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013634 | Metagenome / Metatranscriptome | 269 | Y |
| F025485 | Metagenome / Metatranscriptome | 201 | Y |
| F031456 | Metagenome / Metatranscriptome | 182 | Y |
| F051709 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25930J51415_10023501 | F031456 | N/A | MALIGSFPASSSAVFNLDFLPEYLLIQDAAASSQALSSFSVVVSGLQLMSITDIQRITALAKFDSGAILTAPSTPGTITSRTASYLKLATGRINKATTITGVNSLPSVRNVYAASSNINNVGRRAVEQSINPSANATFDNFESLIFNPTNVLRAQITFANGFSDEFSPAELQAFYAKYHVTDEAGNLNGLTCIDSDSGGGLISQVVLYNGSGGSTVVLKSDYVQL* |
| JGI25930J51415_10023502 | F013634 | AGGA | MAIQIAPLVGAGLGALQQSKIQKAQEGTKTFTKPKTIFGKLIGGVSGRTAAAEASDMYKSEPTSAKVMNALAPSQKQSTPITGGFSFGQEAKTKPYLPYIIVAGIVGIFYLMRRRGGRRRR* |
| JGI25930J51415_10023504 | F025485 | N/A | MENARKFLPLIIGGIVAVAVFFISRKVRQGSGNNQERAEILEKAREAKLAKSILKKSNDEESTSDIG* |
| JGI25930J51415_10023508 | F051709 | N/A | MIPNKERLGIEVAIRPHVATIDVIKSELQKVNGSIERKWRHLDDFSASWSYTIWSNWKDAMNGELSYREYLLIVLEAYQK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |