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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003499 Open in IMG/M |
| Scaffold ID | JGI25930J51415_1003362 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3525 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F007470 | Metagenome / Metatranscriptome | 350 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25930J51415_10033622 | F000450 | AGGCGG | MGDRANFGFVQPNGNTIVLYGHWAGHQMLARLAEAVFKARPRWNDPSYATRIAISQMVADDWNSETGWGLHVNEIGDNEHKIAIVDFEQQTFSLHEEAPRNDXDNKVXGMSNEALXTMDLSNFVEKYADVTLSV* |
| JGI25930J51415_10033624 | F007470 | GGAG | MDYQDGFEDGVKFAREVIVNNIRLWAETSEDGPAYDDIADRLEFGTVDYDL* |
| JGI25930J51415_10033625 | F000311 | GAGG | MYFELTAPDRLSMEMAYWDAQVTGLDPQAIAPLTFNIGTGSIEKVSRIRDKYNLKETYISDYEPTGYTGR* |
| JGI25930J51415_10033626 | F003422 | N/A | MSNELISSKYTFACDPDECDCLIELTSSDGFGFPSGVMEITCPCGRKPTLLSVEHATIQPTETKGNTMEETTTIGSDAFHSPAVEYNPNLLVTYKVLHGYSDPEYTTSKVTSLEWDLHNGRQSQKQASLYSSQISTVKDIITEAYADSEDQETLQAIAEALNIELTRTVEFTATIEVSGTIELNLLEDYDFETEITDNLYVDSQSGNIEIGDTEICYVREA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |