NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25930J51415_1003503

Scaffold JGI25930J51415_1003503


Overview

Basic Information
Taxon OID3300003499 Open in IMG/M
Scaffold IDJGI25930J51415_1003503 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3442
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000714Metagenome / Metatranscriptome924Y
F001125Metagenome / Metatranscriptome769Y
F043940Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
JGI25930J51415_10035031F001125GGCGGMGDRANFGFRDSKENVVFLYGHWAGYNMLAKLANAVQAAEPRWQDESYATRIAISNLIGEDWTQTTGWGIYVNQLGDNEHKVPVIDWSNQTFTLYEEDLSTVVFTSSLAAFVDKYSRLVMV*
JGI25930J51415_10035034F000311GAGMYFELTAPDMLSMQRAYWDAEITGLDPQAMSALTFNIGTGSIEKVSRLRDKYNLTESYISDYETTGY*
JGI25930J51415_10035035F000714GAGGMEETTVGTINDLLTPYNPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNARTNSKAVSAIQNKISLVKDIITEAYADSDDQDTLRAIAEALEIELTREVEWSATIEVSGTLTIDLLESTVDDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN*
JGI25930J51415_10035038F043940N/AKLNDLTIYSEQGVDKEYLTELVFSNRRNFYGNVRAYVYDTLKKTKTTALYLPSEVVNFNRKNQLTRDELGL*
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