Scaffold JGI25930J51415

Basic Information
Taxon OID	3300003499 Open in IMG/M
Scaffold ID	JGI25930J51415_1004515 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003499 Open in IMG/M

Scaffold ID

JGI25930J51415_1004515 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2988
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2988

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000980	Metagenome / Metatranscriptome	814	Y
F007470	Metagenome / Metatranscriptome	350	Y
F047650	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_10045153	F000980	N/A	MTKYQKYTWICTSDCDALIEYTFKDGYGWPNGVTDLTCRCGTSCTLLSVEDATIPYTDTPLPKEERMETETPAVTVPDTYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQSQKQANMYASKIDTVKDIITEAYADSDDQETLRAIAEALDIELTRTVEWSASIEVSGTIELDLLAGYDTDIESEITDALFADSNNGNIEVTDQEVCNVSEN*
JGI25930J51415_10045154	F000311	GAG	MYFELTAPDRLSMEMAYWDAQIMGLDPQALSPLTFNIGTGSIEKVSRIRDKFNLKETYVSDYEPTGYTRR*
JGI25930J51415_10045155	F007470	N/A	MSQTTNRQDIRGDKMDYQDGFEDGVKFTREVIIANIRLWAEKSEDGPAYDDIADRLEFGTVDYDL*
JGI25930J51415_10045156	F047650	GGA	MTSEDLNLIYYCDACSVARASHLIKLLDGELAFCGHHFNKYKEALDKKAYEVIELNKTEEAIPILEKAE*
JGI25930J51415_10045157	F000450	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWNSETGWGLHVNEIGDNEHKIAIVDFDQQTFSLHEEAPRNDKDNKVSGMSNQPIFTMDLSNFVEKYADVVISV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25930J51415_1004515

Overview

Ecosystem & Geography

Associated Families

Sequences