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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003505 Open in IMG/M |
| Scaffold ID | JGIcombinedJ51221_10000813 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7339 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Harvard Forest LTER, Petersham, MA, USA | |||||||
| Coordinates | Lat. (o) | 42.53312 | Long. (o) | -72.189707 | Alt. (m) | Depth (m) | 0 to .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011862 | Metagenome / Metatranscriptome | 286 | Y |
| F013206 | Metagenome / Metatranscriptome | 273 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGIcombinedJ51221_100008131 | F011862 | AGGAG | MSARNSRAFLLMLTTFVVSAAATEVHAGAKIGLEQSRDSIIRIVTQIQRADYEGDRPALKRLHDELAPIPEDSKLASRVLYWRGFALWRRAINGFNETPTPIDLEADLTQAVTDFNAAIARDPTWVEPKMGAGSSLGYLMYLNKKDPTRVQELLQQSSALLKEAMATAPDNPRLLWVLGPIRWSSPPERGGGQDKAIEGYNKGLEVMRDHKRDVADPLEPSWGEPELLMSLAWSNLNRTAPDLKAAEQYAEAALKLVPYWHYVRDILMPQIRAAQAKALHSGRIVGNSEVMA* |
| JGIcombinedJ51221_100008134 | F013206 | AGGAG | MIEDRELDAWREQWSSVAEPSADFQRDFQRKVQQRIKREERRFVLGNILTVIAFIAILIFAWYMRHQSTWMGTGWSTSVCVLVFVSAGVRMWVLRRTWRPETQSTRAFVELWYKRVEARIRLLRISTYLSIGWLIFCAALTAVDWSIIGQDVGDHPKAWVALLVVCVLMQAVLLCYGVAWLRRRKLAELNEVKQILDEMDGKSVR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |