Scaffold JGIcombinedJ51221_10084628

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGIcombinedJ51221_10084628

Scaffold JGIcombinedJ51221_10084628

Overview

Basic Information
Taxon OID	3300003505 Open in IMG/M
Scaffold ID	JGIcombinedJ51221_10084628 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1249
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location Name	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.53312	Long. (^o)	-72.189707	Alt. (m)		Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013663	Metagenome / Metatranscriptome	269	Y
F014996	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ51221_100846281	F014996	N/A	VVWGGSGGTNRVHADIEALKGFHEALVRFRHVQRSVAERSGDEIEMTRASLAAKASHWQARLEQSQAEFDACRAGPGADCSGYARAVEQAAEWLEHIRRWQQRVDEAAGEFRGTAGVFWDLLQNDLPRAESLLLALIADLQAARRVQAGAS*
JGIcombinedJ51221_100846282	F013663	AGG	MHTRPDRDGEEQLRLLGAAWEEAARHWQDEVARQFDTGHWTPLVQQSRTYLEALRALMDLLETAERDTEF*

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