Scaffold JGI20214J51650_10235036

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20214J51650_10235036

Scaffold JGI20214J51650_10235036

Overview

Basic Information
Taxon OID	3300003541 Open in IMG/M
Scaffold ID	JGI20214J51650_10235036 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1266
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location Name	Sacramento, California, United States
Coordinates	Lat. (^o)	38.1072	Long. (^o)	-121.6485	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024131	Metagenome	207	Y
F105435	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20214J51650_102350361	F024131	AGGA	MEVPQEGKYECRLKDQMVIYEASTGSLCGAMQCEIIESGYTFKHTVTLVKADGTIQTKTTDTLKAVFDWDGLDPFWLMDNSVDGGPMRSVEFEIVGGPETGDKGGVYFKSKWLNPL
JGI20214J51650_102350363	F105435	N/A	GFDLPMLVNRARVHGLKIPMTLLWFWKGRPTWHESVFDTLELLSFGRSFDGNGVEDVARVLGLPPKLGNGRDFPLIWRADREGALAYNRRDVEIEIEIARICGCI*

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