NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FS900DNA_10061873

Scaffold FS900DNA_10061873


Overview

Basic Information
Taxon OID3300003542 Open in IMG/M
Scaffold IDFS900DNA_10061873 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)546
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial seamount, northeast pacific ocean
CoordinatesLat. (o)45.87992Long. (o)-129.80294Alt. (m)Depth (m)1917
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038853Metagenome165N

Sequences

Protein IDFamilyRBSSequence
FS900DNA_100618731F038853N/AKTAVIQFNGKLEEIETEWGDKMKYPILLFSHPSYESIPKEGIETVWQSNSQASRDLATALEQGIKELSEAFHKNKCKNGHLPGCICKDCEDL*

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