NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FS900DNA_10324911

Scaffold FS900DNA_10324911


Overview

Basic Information
Taxon OID3300003542 Open in IMG/M
Scaffold IDFS900DNA_10324911 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)571
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial seamount, northeast pacific ocean
CoordinatesLat. (o)45.87992Long. (o)-129.80294Alt. (m)Depth (m)1917
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042083Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
FS900DNA_103249111F042083AGGAGMARRRMAIPHPSITGTASGLAVANYLNQGTSVGAGPTLSKGVIKSTLDGNLNAAFSDLSKNAVNLATSPGGKAVLSSAIVLATAGGLARKWFHSVKLGGTKMYFKI*

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