Scaffold FS900DNA_10640651

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FS900DNA_10640651

Scaffold FS900DNA_10640651

Overview

Basic Information
Taxon OID	3300003542 Open in IMG/M
Scaffold ID	FS900DNA_10640651 Open in IMG/M
Source Dataset Name	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1143
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location Name	Axial seamount, northeast pacific ocean
Coordinates	Lat. (^o)	45.87992	Long. (^o)	-129.80294	Alt. (m)		Depth (m)	1917
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008103	Metagenome	339	Y
F012859	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
FS900DNA_106406511	F008103	N/A	LAFLDAANAGQAAQSFIKGDINGGLKVLSSAFKTNKNDFIKIGVGTLAAKLVLGSMGGSKVLGSVGPLKLRV*
FS900DNA_106406513	F012859	AGG	MVRNRRGLAPWSLAREAGIESATVDGTIEVPQTVQPVLETGFVDEKGNWRGVKSSDKQFIIYKDEAIANGGTILAPTVNADGTWPLDMTGYSDIQIAIKPTNGGNYAITGVMGPDSLSYANLNPVNAAATLKGVVDPRDETLENLINDSSEALTADVWNIFMIQGRL

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