NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007427J51700_109933

Scaffold Ga0007427J51700_109933


Overview

Basic Information
Taxon OID3300003559 Open in IMG/M
Scaffold IDGa0007427J51700_109933 Open in IMG/M
Source Dataset NameGrassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_43 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)800
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.972988Long. (o)-123.116539Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039900Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0007427J51700_1099331F039900N/ASLRNGSSWFRPDEGSQSKDRGPLLGQTHYSSTEKRGGVSGMEQFLSEKDQEVWKYVLSDYRTESERDSEADIPVPDRLLPKRRSQELVRMLKLSQMIGLLLWLNRSELITLGGRERLLYLQAKASFEAIEAGLRFARRLSQEEKLRSDFRHQMRELNRRPQSKHFRQSEARRIGVGYRDKGMLPGSSTGARTRAQKDAYIPSHLVPKILRDALQLVTPACLTADEEWVDLSMVAGSFGTQADIGARPLLPPL*
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Institute for Fundamental Biomedical Research
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