NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26260J51721_1000556

Scaffold JGI26260J51721_1000556


Overview

Basic Information
Taxon OID3300003580 Open in IMG/M
Scaffold IDJGI26260J51721_1000556 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16645
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (96.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015117Metagenome / Metatranscriptome257Y
F066645Metagenome / Metatranscriptome126N
F076624Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
JGI26260J51721_100055613F066645AGGMKVSIKFECNSYDDGYDGETSSSREGVEDLYAMAQFLTDAVKGAGYTYVTDVGFEKDDGSMIFGEI*
JGI26260J51721_100055615F015117AGGAMAKFTMDMVLEYAKVFEENRDMGGDGNNAAKKAAKHNGQYVTNAYFTDEAQVQELLDGGMDPTPMGNDRVKQGNDFGIGKFIKLARMHDHVMTFTDKKGNPTDVDFGGAPKVVNLTNGVENKAWWTFSEDGTLGNGTKAKVQFETYSDGAGLRLIAIGVTDHVAWEDNSGPSEDDELFMVA*
JGI26260J51721_100055619F076624AGGAMVDDDEYYSKLTKKASSGVVKYGWYDCVDGFKQADVDMGSAFHRKLDWMNKAADIYLSDNNKMAGFVGKFSEDCGISYDYGSQLNRIRKTFSDCTTKNFSHDTLKSLLSTPEELREEIVSSGKPVTVEEIKEAKEVHKEIQDVSEFKDIKQSYDDNDIDIFDVVEEVKARKASMPVVPPYNINEAMGAIKGIAQMYGQQYSGTTQDAAQVLLDKIMEEHDTDDIGLSIARDYAKWFLSLKSVIDLVGPELEDFLSDKPNLTVVN*
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