NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26246J51724_1005501

Scaffold JGI26246J51724_1005501


Overview

Basic Information
Taxon OID3300003592 Open in IMG/M
Scaffold IDJGI26246J51724_1005501 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4834
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005454Metagenome / Metatranscriptome400Y
F010928Metagenome / Metatranscriptome297N
F022015Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
JGI26246J51724_10055013F010928N/AMETQEFMGSGQLVDRLTAQVRDRGFAMALLKKRGDMTADGKLTAKGESRNRMTAEERALDRAGETSSSATYNPETNRVTKNT*
JGI26246J51724_10055017F022015N/AMYYKSKSNITWEQAFAEVNASVLRHEIICAIASEVAGKPVENLIGFTDEQKESVWCDYYNTTELCX*
JGI26246J51724_10055018F005454N/AMRIIKHFNPHFPERETYKCTIRYATKFGSLDEVTKWRDDQMENEAEYKRIEELDRQRAGEYYKTLTYKGD*
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