NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26463J51803_1003959

Scaffold JGI26463J51803_1003959


Overview

Basic Information
Taxon OID3300003605 Open in IMG/M
Scaffold IDJGI26463J51803_1003959 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4267
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F086364Metagenome111N
F104114Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
JGI26463J51803_100395910F069506GGAGGMQLEQSTYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWDDPEFPNDIPEIIIRAVDKLIGKPLAWYCELVRDPSGFTGEYSFIAVDPQTRKCLTYRQFTFDGVNVHYFLSVSGTVIYYEDIIGLVIKLLNKIQPELVTE*
JGI26463J51803_10039595F104114AGGAGGMERLRLWLSLTQDEKFAAAEKELKNATLDIHEDFEEEWSLSRSVEDFAPDGLAELISWAAECLLGLQWQLEWDFDADVEDMFLSKGTTTYWFRVFDPETGCILTRNPNGIPGERFRYCKFIETLGDAVQAAVDLADIIAENLPVVRSQVSSREVK*
JGI26463J51803_10039599F086364AGGAGGMEREKIIAALETAFAEISGAKYEDEPETFAEFLESFKKFRDPETPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLRLVQQA*
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