NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20129J51890_10031348

Scaffold JGI20129J51890_10031348


Overview

Basic Information
Taxon OID3300003614 Open in IMG/M
Scaffold IDJGI20129J51890_10031348 Open in IMG/M
Source Dataset NameHypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2214
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameMonarch Geyser, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F076263Metagenome / Metatranscriptome118Y
F080247Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
JGI20129J51890_100313484F076263GGAMLSAEDLSAILDDLEDICARIPDSVTFHPTLEIHRHHANEEATYIKFDCRDHKYTLTIVRSGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE*
JGI20129J51890_100313485F080247N/AMIVWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKERDIYANVSLTDPDTIKEFMTMSTYYRKYGVSIPNVLDKIMYRKVPT*
JGI20129J51890_100313486F061983AGGAGGLKKYVFKVKVVQIKLVNDEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYGDVIDVEKLKDVGAIVVKESDGEPLRTMKTLVAKWYNKKLVEEEKAYEVCNTFVT*
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