Scaffold JGI26380J51729_10004067

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26380J51729_10004067

Scaffold JGI26380J51729_10004067

Overview

Basic Information
Taxon OID	3300003619 Open in IMG/M
Scaffold ID	JGI26380J51729_10004067 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5826
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)	110
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047713	Metagenome	149	N
F092887	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26380J51729_100040673	F092887	AGGGGG	VVISKPIRRNKNTPKSVVLIEPPRKVSTHDRIIKILKKHKNGLPLIEIQYKTKVLSMGNLHHTIVFMVRAGEIDKEKCPHCSSTELYKLHI*
JGI26380J51729_100040679	F047713	AGGAG	MEIIGQGEVAALEIIKDMFGNSCDYLTQVKLSDMVSPEYLETFSDRQLKETIDIVVVTLFECLAIRVQDKHHSSSRMATIDNIQKLMLEWNGWKVIDVWHYECKELWKDKVNKKSRLELELAIKES

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