NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NAP1_1002813

Scaffold NAP1_1002813


Overview

Basic Information
Taxon OID3300003645 Open in IMG/M
Scaffold IDNAP1_1002813 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1667
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location NameGulf of Naples
CoordinatesLat. (o)40.7245Long. (o)14.3775Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033463Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
NAP1_10028133F033463N/AVLISTVYWLALYNGVLFLNLFVFVVLSIVYVYYCKWVNANYEHMFSKESVDEKLKDMNGFSRRIITGIWVSHFAFFFFGGISLGVSVPFIIYFNL*
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