Scaffold LSCM3L_1022348

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LSCM3L_1022348

Scaffold LSCM3L_1022348

Overview

Basic Information
Taxon OID	3300003667 Open in IMG/M
Scaffold ID	LSCM3L_1022348 Open in IMG/M
Source Dataset Name	Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1103
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location
Location Name	Lithgow State Coal Mine, New South Wales, Australia
Coordinates	Lat. (^o)	-33.460524	Long. (^o)	150.168149	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105249	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
LSCM3L_10223483	F105249	AGGAGG	MKLTNTIKHLAVGCMAGAAILIGNWLIGLIFSDYSGGLAGFAAVGFGFATILWERSQFYKATEPEKGVEKKLISPKQYWKTKWLDTIVDLVAGNAPVWLILAAAGLV*

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