NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0006876_109321

Scaffold Ga0006876_109321


Overview

Basic Information
Taxon OID3300003674 Open in IMG/M
Scaffold IDGa0006876_109321 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)893
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010178Metagenome / Metatranscriptome307Y

Sequences

Protein IDFamilyRBSSequence
Ga0006876_1093212F010178GGAGGMVNSRFQSRFTRCRAITEHEVGRPRTEMLRKNPIIAGQLEYLVQPIYDFYGVAVATAVTKQSLFAQPIGANYTPAGGAALVKTLYHTNLVQPGMLDAPKKMLVKAIALILRNDVAPQDLASFIGQTLLQLQISGKDYWTGLAQKCPAGGGTFGFYISTQTLAAGGTMANGGSNGYPHALNTNTITDDMPQVPGLPAMDPILGQLIEQQQN
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