Scaffold PicViral

Basic Information
Taxon OID	3300003690 Open in IMG/M
Scaffold ID	PicViral_1000207 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28424
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (89.47%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

28424

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (89.47%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	53.0	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Mid-Cayman Rise, Caribbean Sea

Coordinates

Lat. (^o)

53.0

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003161	Metagenome	504	N
F003481	Metagenome	484	Y
F005219	Metagenome / Metatranscriptome	408	Y
F006641	Metagenome / Metatranscriptome	368	Y
F007893	Metagenome / Metatranscriptome	343	Y
F017722	Metagenome / Metatranscriptome	239	Y
F054352	Metagenome	140	Y
F072748	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10002072	F072748	AGGAG	MTMTVYSVGDHIRIDGWCDCGELIKPGKGGVLALRQSSTCWHGPKTLVLRVFASGDYLLENGHGYVRLAGPHEVCC*
PicViral_100020727	F003481	N/A	MDDLQEELRLAREELERLKATEDKPEKIQMTSGDIVRLVIAAPVVFVWLFLGSRIIISATTSQGVLENIEPLLLALSILTIPVTGILAALFKIDGNGK*
PicViral_100020729	F003161	GAGG	LSRSGALDRIDVLLSTITDPAFTAVIRAEPLALSGTPVLAYWIQSRTNGWQTLGDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGPATVSTIDLGGSLYRTATISFDIQLYEEITITP*
PicViral_10002073	F005219	AGGAGG	MTIRRTCPECGGTMTAELLRPDPHEPPVLMLICPCGYWEKPAADIEADVENHPRMPGF*
PicViral_100020730	F007893	GGAG	MAEPFGVHFEITGPVFDGTGLRVMQGIINRGLFDIATLEGANKVKDQLYGPPASQYWKSSKSERHGAHTRDLKRRVAASQPSDNRAVFNAGGVHYAEKVEALYHMFENATNAINRDKAALYHKYIGGALIEAFD*
PicViral_100020732	F006641	AGGAGG	MAKTMCIQNFSSGDGVVYESGVEYDVPAATLKANPAYFKQGGRPTNKMAETTEDKEVTT*
PicViral_100020734	F017722	AGGAG	LDTKEIRNEAGALLDQAQTAIEQGELDTFQRLADEAQVRMERADQIDQAASQVRKLRGEFSQPLNAIPVTSNDVAVYNAMDTTARIKNDYKPASWVKGLPAMAQPLWVQDLCGDNVKDEARFMTDTFIKWMRSPSDDMFWKTASPDEVKAMQEDTDKLLCPVS*
PicViral_10002079	F054352	AGGAG	MKTPIQRLLEAQRHKDIRDVVLDTLERYRATRTMVQDCCDDLGISWGTFYKWCAELDIEVGKYHFAEVRRG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold PicViral_1000207

Overview

Ecosystem & Geography

Associated Families

Sequences