NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0032354_1037662

Scaffold Ga0032354_1037662


Overview

Basic Information
Taxon OID3300003693 Open in IMG/M
Scaffold IDGa0032354_1037662 Open in IMG/M
Source Dataset NameAvena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)674
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactobacillus → Lactobacillus delbrueckii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.97364Long. (o)-123.117453Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019767Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0032354_10376621F019767N/AMDTSAAVIGSGGDQRTITREEFLRRLGHLAEKWQAHHGAGLEIRHETGKLLNERFGPPTAKQKRGEGVLKEVVERLQVAESELSRMRRFAFHFESVKALKEKYPEATTWTAVKDLLPRLNKPKKGSAKGAASRAKRKQAKPVQFGRVKQSLEALTSKLRKAREGLTDAERKELLAQFRELVEAVAHCLKMPLSVSQVSEEPAPPAAPKE*
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