NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0003072J53071_107413

Scaffold Ga0003072J53071_107413


Overview

Basic Information
Taxon OID3300003697 Open in IMG/M
Scaffold IDGa0003072J53071_107413 Open in IMG/M
Source Dataset NameGroundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 3 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1086
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.099444Long. (o)-73.604444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022577Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0003072J53071_1074131F022577N/AVTGYLSYHMRSNLFQQSKGASDPTLAEPTAGPVTSNPFSSLAWDYTGPIAENVGIWTEWYSTNFNPVTTGAGSVGNQFGAVRNDEFDVRMGWNPGEGGNIVSVFINNQGQTSPFFGAFGSGTPAGGQGQFIHTGVAAWVKDRVVVQLAVAPGVDNLDYKRMTYGVVLGFLPMNTDGMWLMPTFSMLAGNDMAPTAGGTPGVAALSKGGAGYTSQSMGDATRTLFDVRFGFLDHGHWSFNSATGYSWNKETYNDGAGSTLVGIGSTVRVWYDRTYGINAGLNKRLTYDFTDASGVVHPIPSDLGYNVLLVYRQAMNFAWEFGFSNAQTLRLNQNWRNGWSWNIQWHFLY*
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