Scaffold PicMicro_10000924

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold PicMicro_10000924

Scaffold PicMicro_10000924

Overview

Basic Information
Taxon OID	3300003702 Open in IMG/M
Scaffold ID	PicMicro_10000924 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	30295
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	18.55	Long. (^o)	81.716667	Alt. (m)		Depth (m)	5000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004768	Metagenome / Metatranscriptome	424	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1000092416	F004768	GAG	MKTAIIEILEKGETIFGSPTNGEYFVRRFEDMEEMGGSFFKTIEEAETYVRKYQSTFLGEENGS*

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