NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold PicMicro_10003036

Scaffold PicMicro_10003036


Overview

Basic Information
Taxon OID3300003702 Open in IMG/M
Scaffold IDPicMicro_10003036 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28860
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (37.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)18.55Long. (o)81.716667Alt. (m)Depth (m)5000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015789Metagenome252Y
F060340Metagenome / Metatranscriptome133Y
F084710Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
PicMicro_1000303617F015789N/AMIMTDKNMETKTVKVYGPWVKGHRTVKEISLDEWTSYTPLNRRPRGEWFRVVKW*
PicMicro_1000303620F084710N/AMRDKINEMVHPIDNGKVITDEVIVSCCGCNEEVRITRDEANEWTDTDWFMCHECE*
PicMicro_100030363F060340N/AMKLELEKIVGTAVSAVVTAMVIGAAAIVWRGATTVDAKVNQATDDLSLQAAYITQAVDMLEAEVLELKIIVKDLAAHQKEFHREIEIPEEQFIQRQLPEIRKGFRKRKGEQ*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.